BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002D05SP1|AL424953
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig476 1716 0.0
>3x_Contig476
Length = 2410
Score = 1716 bits (839), Expect = 0.0
Identities = 918/973 (94%), Gaps = 1/973 (0%)
Strand = Plus / Plus
Query: 3 tctctcatgttgtcgacgtattggtttcttgamagayggtcgatacggactcttggmgtc 62
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 1229 tctctcatgttgtcgacgtattggtttcttgaaagatggtcgatacggactcttggagtc 1288
Query: 63 ttacattttmmmgcgaaatcsatagtytccttgacggtmatctttgggaaatggmaatcc 122
||||||||| |||||||| ||||| ||||||||||| ||||||||||||||| |||||
Sbjct: 1289 ttacattttaaagcgaaatcgatagtttccttgacggtaatctttgggaaatggaaatcc 1348
Query: 123 aattcaggacagtcaatcacgtacccyttgactttttccatcatttcagcctgasamasa 182
||||||||||||| ||| |||||||| |||| |||||||||||||||||||||| | | |
Sbjct: 1349 aattcaggacagtaaatgacgtaccctttgaatttttccatcatttcagcctgagaaaga 1408
Query: 183 ccatcgtmagacamgtcaccagtsacttcgactaaytcmcttgtttcaccagacacacat 242
||||||| ||| | ||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct: 1409 ccatcgtaagagaagtcaccagtgacttcgactaattcacttgtttcaccagaaacacat 1468
Query: 243 ttymgtmaagtggaacaaccagcacctggtctaccgacaacgaatmacatttcaccggat 302
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1469 tttagtaaagtggaacaaccagcacctggtctaccgacaacgaataacatttcaccggat 1528
Query: 303 tcgacgacaccgacacagtgttggataatgttacgcmatgggacatcatctttcttacca 362
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1529 tcgacgacaccgacacagtgttggataatgttacgcaatgggacatcatctttcttacca 1588
Query: 363 gtcattttcttccaaasatgtactggaagatgaccccaagamcgtattamttcttccacg 422
|||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1589 gtcattttcttccaaagatgtactggaagatgaccccaagaacgtattaattcttccacg 1648
Query: 423 gagggaccgamg-cagcmgaagcmtcgacaccmacagcggtcaaatcgttgaaggcmaca 481
|||||||||| | |||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 1649 gagggaccgaaggcagcagaagcatcgacaccaacagcggtcaaatcgttgaaggcaaca 1708
Query: 482 ccggaatcacctgattcamtaccctggctgatttgagagtyacgtcagtcatccaatmmg 541
|||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||| |
Sbjct: 1709 ccggaatcacctgattcaataccctggctgatttgagagttacgtaagtaatccaataag 1768
Query: 542 gctttcmmattgacatccaattgatcaacttcmmacgattccmtctgcttcttggtcttc 601
|||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1769 gctttcaaattgaaatccaattgatcaacttcaaacgattccatctgcttcttggtcttc 1828
Query: 602 gtagagatgactcttgccaaggattcgattctmtcagcaccattttcttgagacaagatg 661
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1829 gtagagatgactcttgccaaggattcgattctatcagcaccattttcttgagacaagatg 1888
Query: 662 gtagtsatttgacgggataattgacamgcagcattttgagattcgttatcctcttcgtaa 721
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 1889 gtagtgatttgacgggataattgagaagcagcattttgagattcgttatcctcttcgtaa 1948
Query: 722 tggaaggaatttactgattgagcataggaatcagtagaatggatggaatttcttccatcc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 tggaaggaatttactgattgagcataggaatcagtagaatggatggaatttcttccatcc 2008
Query: 782 tcattagtcttacgacctgttgtcgattcagaagacatgacggtttcaaatgatacagat 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 tcattagtcttacgacctgttgtcgattcagaagacatgacggtttcaaatgatacagat 2068
Query: 842 gaaaagatgtatcaatcaattaacagattaataggaaattagcaattaacagcagtvact 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2069 gaaaagatgtatcaatcaattaacagattaataggaaattagcaattaacagcagtaact 2128
Query: 902 gggataaatattagacgatgtgaaaagtttataacaaaaaggtatcagtaccaatagaaa 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2129 gggataaatattagacgatgtgaaaagtttataacaaaaaggtatcagtaccaatagaaa 2188
Query: 962 aatattcgattga 974
|||||||||||||
Sbjct: 2189 aatattcgattga 2201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.34
Gapped
Lambda K H
1.42 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5148
Number of Sequences: 1807
Number of extensions: 5148
Number of successful extensions: 131
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.6 bits)
S1: 11 (23.0 bits)
S2: 49 (100.7 bits)